find_markers
hnoca.snapseed.markers.find_markers(adata, group_name, features=None, layer=None)
Find markers for each cluster.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
adata
|
AnnData
|
AnnData object |
required |
group_name
|
str
|
Name of the column in adata.obs that contains the cluster labels |
required |
features
|
list | None
|
List of features to use for marker identification |
None
|
layer
|
str | None
|
Layer in adata to use for expression |
None
|
Returns
A `pd.DataFrame` with AUROC and detection ratio for each gene and cluster.