test_de_paired
hnoca.stats.de.test_de_paired(query_adata, matched_adata, covar=None, num_threads=1, var_names=None, adjust_method='holm')
Test for differential expression between query data and matches reference cells using an F-test.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
query_adata
|
AnnData
|
AnnData object The query data |
required |
matched_adata
|
AnnData
|
AnnData object The matched reference data |
required |
covar
|
str | DataFrame | None
|
str or pd.DataFrame The covariates |
None
|
num_threads
|
int
|
int The number of threads to use |
1
|
var_names
|
list | None
|
list The variable names to test |
None
|
adjust_method
|
str
|
str The method to adjust p-values. See https://www.statsmodels.org/dev/generated/statsmodels.stats.multitest.multipletests.html |
'holm'
|
Returns
A `pd.DataFrame` with the differential expression results