Skip to content

compute_glycolysis_score

hnoca.utils.stress.compute_glycolysis_score(adata, **kwargs)

Compute glycolysis score using hallmark glycolysis genes from MSigDB.

Parameters:

Name Type Description Default
adata AnnData

Anndata object with gene expression data.

required
**kwargs

Additional arguments passed to sc.tl.score_genes.

{}

Returns:

Type Description

None. The glycolysis score is stored in adata.obs["Hallmark_Glycolysis"].